exRNAdisease

Entry Detail

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General Information

Database ID: exR0373849 RNA Name: ALAD RNA Type: mRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 113386312 End Site(bp): 113401290 External Links: ENSG00000148218

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand SUSD2 chr22 24181487 24189106 + EIF4G2 chr11 10797050 10808940 - RTL6 chr22 44492583 44498233 - FAM32A chr19 16185380 16192046 + PKM chr15 72199029 72231822 - MRPL12 chr17 81703367 81707517 + NEK1 chr4 169392857 169612629 - NAPB chr20 23374519 23421519 - TAF6L chr11 62771357 62787342 + GAPDH chr12 6534512 6538374 + UBR5 chr8 102252273 102412759 - CHD4 chr12 6570082 6614524 - TIPIN chr15 66336191 66386746 - ZCCHC8 chr12 122471599 122501073 - HNRNPK chr9 83968083 83980616 - AC139530.2 chr17 81703371 81720539 + ARHGDIA chr17 81867721 81871378 - RPL4 chr15 66498015 66524532 - PFN1 chr17 4945652 4949061 - HLA-DRA chr6 32439878 32445046 + POU5F1 chr6 31164337 31180731 - YBX3 chr12 10699089 10723323 - RAB13 chr1 153981617 153986358 - RPL41 chr12 56116590 56117967 + HSPBP1 chr19 55262223 55280381 - PLEC chr8 143915147 143976734 - HELLS chr10 94501434 94613905 + PRC1 chr15 90966040 90995629 - CRMP1 chr4 5748084 5893086 - C17orf100 chr17 6651762 6693202 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068831.7 chr15 91022766 91023200 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA