exRNAdisease

Entry Detail

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General Information

Database ID: exR0373850 RNA Name: ALAS1 RNA Type: mRNA Chromosome: chr3 Starnd: + Coordinate: Start Site(bp): 52198086 End Site(bp): 52214327 External Links: ENSG00000023330

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RAB28 chr4 13361354 13484365 - SUPT6H chr17 28662198 28702679 + ENTPD1 chr10 95711779 95877266 + SELENOH chr11 57741250 57743554 + RBM15B chr3 51391285 51397908 + AGO4 chr1 35808016 35857890 + STIP1 chr11 64185272 64204543 + RAB11B chr19 8389981 8404434 + RBP1 chr3 139517434 139539829 - ATP5MG chr11 118401606 118431496 + RPS29 chr14 49570984 49599164 - MRPL4 chr19 10251901 10260055 + AP2S1 chr19 46838136 46850992 - RPL7 chr8 73290242 73295789 - RPL23 chr17 38847860 38853764 - NR3C1 chr5 143277931 143435512 - ABLIM1 chr10 114431113 114768061 - ENO1 chr1 8861000 8879190 - RPL37A chr2 216498825 216579180 + RAB1A chr2 65070696 65130331 - MGST1 chr12 16347142 16609259 + CBX1 chr17 48070052 48101478 - MYL6 chr12 56158161 56163496 + HNRNPA0 chr5 137745651 137754363 - ZNF207 chr17 32350117 32381886 + PPFIBP2 chr11 7513298 7657127 + KLHL23 chr2 169694488 169776989 + PARVB chr22 43999211 44172949 + ARHGEF11 chr1 156934840 157045370 - NDFIP2 chr13 79481124 79556075 + miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA