exRNAdisease

Entry Detail

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General Information

Database ID: exR0373854 RNA Name: ALDH16A1 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 49453225 End Site(bp): 49471050 External Links: ENSG00000161618

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand MED22 chr9 133338312 133348131 - SOX4 chr6 21593751 21598619 + SLC52A2 chr8 144354135 144361272 + LARGE2 chr11 45921621 45929096 + EEF1A1 chr6 73515750 73523797 - FASTK chr7 151076593 151080866 - FAT1 chr4 186587794 186726722 - LGALS9 chr17 27629798 27649560 + PPP1R10 chr6 30600413 30618612 - GRB10 chr7 50590063 50793462 - ATP6V1G2-DDX39B chr6 31530219 31546608 - SLC25A11 chr17 4937130 4940053 - GSPT1 chr16 11868128 11916082 - HOXB3 chr17 48548870 48604912 - THOP1 chr19 2785503 2815807 + CYB5B chr16 69424619 69466264 + ARFGAP1 chr20 63272785 63289790 + CBX6 chr22 38861422 38872249 - CTNNA1 chr5 138610967 138935034 + B3GALT6 chr1 1232237 1235041 + ADAMTS1 chr21 26835755 26845409 - DHX36 chr3 154272546 154324487 - ISG20L2 chr1 156721891 156728799 - CDC34 chr19 531760 542092 + ZNRF2 chr7 30284597 30367689 + BCR chr22 23179704 23318037 + EEF2 chr19 3976056 3985463 - RBM15 chr1 110338506 110346681 + GPATCH2L chr14 76151916 76254342 + DDX39B chr6 31530219 31542448 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020928.2 chr19 36773712 36775908 - AC067852.1 chr17 42536510 42562062 + AC132217.1 chr11 2129121 2129964 - VPS9D1-AS1 chr16 89711856 89718165 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA