exRNAdisease

Entry Detail

General Information

Database ID:

exR0373857

RNA Name:

ALDH1A2

RNA Type:

mRNA

Chromosome:

chr15

Starnd:

-

Coordinate:

Start Site(bp):

57953424

End Site(bp):

58497866

External Links:

ENSG00000128918

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
CC2D1A	chr19	13906201	13930879	+
DDR1	chr6	30876421	30900156	+
LTBP4	chr19	40592883	40629818	+
MT-CO2	chrMT	7586	8269	+
MT-CYB	chrMT	14747	15887	+
NFATC2IP	chr16	28950807	28967097	+
PLCG2	chr16	81739097	81962685	+
RIPOR1	chr16	67518418	67546788	+
SENP3	chr17	7561919	7571969	+
SRCAP	chr16	30698209	30741409	+
TSC22D4	chr7	100463359	100479232	-

miRNA targets:

NA

circRNA targets:

NA

lncRNA targets:

NA

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA