exRNAdisease

Entry Detail

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General Information

Database ID: exR0373859 RNA Name: ALDH1B1 RNA Type: mRNA Chromosome: chr9 Starnd: + Coordinate: Start Site(bp): 38392702 End Site(bp): 38398661 External Links: ENSG00000137124

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand UPF1 chr19 18831938 18868236 + ISG20L2 chr1 156721891 156728799 - STAU1 chr20 49113339 49188367 - SNURF chr15 24954986 24977850 + P4HB chr17 81843161 81860624 - GLYR1 chr16 4803203 4847288 - POLRMT chr19 617221 633537 - C9orf129 chr9 93318199 93346414 - LSP1 chr11 1852970 1892267 + HNRNPU chr1 244840638 244864560 - TPCN1 chr12 113221050 113298585 + LRG1 chr19 4536402 4540036 - RNF150 chr4 140859807 141212877 - CLDN6 chr16 3014712 3020071 - TXNDC5 chr6 7881517 7910788 - SSBP1 chr7 141738334 141787922 + PPP1R12A chr12 79773563 79935460 - YIPF1 chr1 53851719 53889798 - BLOC1S5-TXNDC5 chr6 7881522 8064364 - WDR70 chr5 37379285 37753435 + SPOP chr17 49598884 49678163 - TP53 chr17 7661779 7687550 - SNRPN chr15 24823637 24978723 + NOLC1 chr10 102152176 102163871 + TMEM132B chr12 125186836 125662377 + HMGA1 chr6 34236873 34246231 + LY75 chr2 159803355 159904756 - PTP4A1 chr6 63521746 63583436 + HSP90AB1 chr6 44246166 44253888 + KLC2 chr11 66257294 66267860 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020663.1 chr16 4730115 4752565 - AP003175.1 chr11 75069243 75096964 - SNHG3 chr1 28505980 28510892 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA