exRNAdisease

Entry Detail

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General Information

Database ID: exR0373862 RNA Name: ALDH2 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 111766887 End Site(bp): 111817532 External Links: ENSG00000111275

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand WASF3 chr13 26557683 26688948 + RACK1 chr5 181236897 181248096 - ANKS1A chr6 34889255 35091406 + NME2 chr17 51165435 51171747 + EIF5A chr17 7306999 7312463 + ZNF891 chr12 133106817 133130473 - NPM1 chr5 171387116 171411137 + LYSMD1 chr1 151159748 151165948 - PEX5 chr12 7188685 7218574 + RBM39 chr20 35701347 35742312 - LAMA5 chr20 62307955 62367312 - PITPNM1 chr11 67491768 67506263 - RPL28 chr19 55385345 55403250 + ANKRD11 chr16 89267630 89490561 - TUBA1C chr12 49188736 49274603 + RBPJ chr4 26163455 26435131 + PRPF19 chr11 60890547 60906585 - PRTG chr15 55611544 55743152 - ZNF671 chr19 57719751 57727624 - CSK chr15 74782057 74803198 + AC002996.1 chr12 111753890 111791418 + GPT2 chr16 46884362 46931289 + PTPN9 chr15 75463251 75579315 - SIRT7 chr17 81911939 81921323 - DR1 chr1 93345907 93369493 + ACTB chr7 5527148 5563784 - AC010422.3 chr19 12643831 12648397 - RPL13 chr16 89560657 89566828 + APOBEC3G chr22 39077067 39087743 + SIKE1 chr1 114769479 114780685 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC092117.1 chr16 2777319 2780568 + AC108134.2 chr16 3156736 3157483 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA