exRNAdisease

Entry Detail

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General Information

Database ID: exR0373867 RNA Name: ALDH4A1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 18871430 End Site(bp): 18902724 External Links: ENSG00000159423

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand DDI2 chr1 15617458 15669044 + LIN28A chr1 26410817 26429728 + EIF5 chr14 103333544 103345025 + RPL7A chr9 133348218 133351426 + SLC39A1 chr1 153959099 153968184 - GRB2 chr17 75318076 75405709 - RPL23 chr17 38847860 38853764 - ERBB2 chr17 39687914 39730426 + CASP7 chr10 113679162 113730907 + METTL16 chr17 2405562 2511891 - SERF2 chr15 43777087 43802589 + ESPL1 chr12 53268299 53293638 + SBF1 chr22 50445000 50475035 - ACTB chr7 5527148 5563784 - OSBPL9 chr1 51577179 51798427 + HLA-DRB1 chr6 32578769 32589848 - EXOSC7 chr3 44975241 45036066 + DCTN1 chr2 74361154 74392087 - HDHD5 chr22 17137511 17165287 - RHNO1 chr12 2876258 2889524 + ZDHHC16 chr10 97446170 97457370 + EIF3H chr8 116642130 116766925 - BCAM chr19 44809071 44821421 + FRAS1 chr4 78057323 78544269 + NKTR chr3 42600655 42648735 + TUBA1A chr12 49184795 49189080 - EEF1B2 chr2 206159585 206162928 + SIGIRR chr11 405716 417455 - FUS chr16 31180110 31194871 + CTNNBIP1 chr1 9848276 9910336 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + LINC01641 chr1 227393554 227431035 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA