exRNAdisease

Entry Detail

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General Information

Database ID: exR0373868 RNA Name: ALDH5A1 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 24494867 End Site(bp): 24537207 External Links: ENSG00000112294

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand YWHAB chr20 44885702 44908532 + B2M chr15 44711487 44718877 + SLC25A6 chrX 1386152 1392113 - MAP7D1 chr1 36155579 36180849 + TTC19 chr17 15999784 16045015 + EIF3E chr8 108201216 108435333 - FBRSL1 chr12 132489551 132585188 + IRF2BP2 chr1 234604269 234609525 - USP53 chr4 119212587 119295517 + SH3GLB2 chr9 129007036 129028303 - MYO10 chr5 16661907 16936288 - TET3 chr2 73986404 74108176 + STK11IP chr2 219597857 219616451 + NFKB2 chr10 102394110 102402524 + MAPK12 chr22 50245450 50261716 - ERRFI1 chr1 8004404 8026309 - PNMA2 chr8 26504701 26514092 - HUWE1 chrX 53532096 53686728 - GTF2F1 chr19 6379572 6393981 - RPS6 chr9 19375715 19380236 - RPL37A chr2 216498825 216579180 + SLX1A chr16 30193887 30197561 + BAX chr19 48954815 48961798 + IGF2 chr11 2129112 2141238 - KLC4 chr6 43040777 43075095 + ZNF33A chr10 38010650 38065088 + ZNF12 chr7 6688433 6706947 - LASP1 chr17 38869859 38921770 + RPL13 chr16 89560657 89566828 + FAM104B chrX 55143102 55161310 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-129-5p chr7 128207876 128207896 + hsa-miR-330-5p chr19 45639049 45639070 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC022201.2 chr2 70301451 70302072 + AL645941.1 chr6 32970232 32970886 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA