exRNAdisease

Entry Detail

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General Information

Database ID: exR0373869 RNA Name: ALDH6A1 RNA Type: mRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 74056847 End Site(bp): 74084492 External Links: ENSG00000119711

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand SYNCRIP chr6 85607785 85643792 - SRPRB chr3 133784023 133825772 + HNRNPA1L2 chr13 52642425 52643796 + SLC12A2 chr5 128083766 128189677 + KIAA0556 chr16 27550133 27780369 + RPL8 chr8 144789765 144792587 - ATP5PB chr1 111448864 111462773 + CFL1 chr11 65823022 65862026 - NOP53 chr19 47745546 47757058 + SFRP2 chr4 153780591 153789083 - METAP1 chr4 98995659 99062809 + PPP1R37 chr19 45091396 45148077 + DNAJA2 chr16 46955362 46973674 - ZNF544 chr19 58228594 58277495 + COLGALT1 chr19 17555649 17583162 + SRSF1 chr17 58000919 58007346 - BRD2 chr6 32968594 32981505 + EIF1 chr17 41688885 41692668 + BOD1 chr5 173607145 173616659 - BCL2L13 chr22 17628855 17730855 + COPS4 chr4 83034447 83075818 + TSPAN3 chr15 77041404 77083984 - CCND1 chr11 69641156 69654474 + LIN28A chr1 26410817 26429728 + PTPRU chr1 29236516 29326813 + CALM3 chr19 46601074 46610782 + AC015813.2 chr17 57989038 58007246 - RACK1 chr5 181236897 181248096 - PRPSAP2 chr17 18840085 18931287 + HSP90AB1 chr6 44246166 44253888 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand PSMA3-AS1 chr14 58265365 58298134 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA