exRNAdisease

Entry Detail

---



General Information

Database ID: exR0373870 RNA Name: ALDH7A1 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 126531200 End Site(bp): 126595362 External Links: ENSG00000164904

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CNDP2 chr18 74495816 74523454 + SLC2A3 chr12 7919230 7936187 - CRISPLD1 chr8 74984505 75034558 + NUCKS1 chr1 205712822 205750182 - LIN28B chr6 104936616 105083332 + HERC2 chr15 28111040 28322172 - CALCOCO1 chr12 53708517 53727745 - DUSP16 chr12 12473282 12562863 - NASP chr1 45583846 45618904 + WDR24 chr16 684622 690444 - SBNO1 chr12 123289109 123364847 - CIB2 chr15 78104606 78131535 - EEF2 chr19 3976056 3985463 - SF3B1 chr2 197388515 197435091 - CAPZA1 chr1 112619805 112671616 + KHDRBS1 chr1 32013868 32060850 + TUBA1C chr12 49188736 49274603 + SOX13 chr1 204073115 204127743 + EIF3C chr16 28688558 28735730 + ERLIN2 chr8 37736601 37758422 + CD276 chr15 73683966 73714514 + DDHD2 chr8 38225218 38275558 + CYTL1 chr4 5014586 5019458 - WDHD1 chr14 54938949 55027105 - EIF4H chr7 74174245 74197101 + KANSL3 chr2 96593170 96642787 - SCRN1 chr7 29920104 29990289 - DPPA4 chr3 109326141 109337572 - ZNF589 chr3 48241100 48299253 + RPL23 chr17 38847860 38853764 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012467.2 chr3 53858994 53861576 - AC016876.2 chr17 7581964 7584086 - SNHG14 chr15 24978583 25420336 + SOX21-AS1 chr13 94703454 94803430 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA