exRNAdisease

Entry Detail

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General Information

Database ID: exR0373872 RNA Name: ALDH9A1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 165662216 End Site(bp): 165698863 External Links: ENSG00000143149

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand FYN chr6 111660332 111873452 - NIPSNAP1 chr22 29554808 29581327 - GSE1 chr16 85169525 85676204 + KCNMB4 chr12 70366290 70434292 + RPS15 chr19 1438358 1440494 + HES1 chr3 194136148 194138732 + B4GALT6 chr18 31622247 31685836 - FBRSL1 chr12 132489551 132585188 + TCF19 chr6 31158547 31167159 + RABEP2 chr16 28904421 28936526 - MORF4L2 chrX 103675496 103688158 - PCK2 chr14 24094053 24110598 + LRRFIP1 chr2 237627587 237813682 + SRSF2 chr17 76734115 76737374 - ITCH chr20 34363241 34540748 + ZNF384 chr12 6666477 6689572 - SPARC chr5 151661096 151686975 - CD55 chr1 207321376 207386804 + ENO1 chr1 8861000 8879190 - RPS6 chr9 19375715 19380236 - DDOST chr1 20651767 20661544 - SRSF3 chr6 36594353 36605600 + KHSRP chr19 6413348 6424794 - RALY chr20 33993646 34108308 + SLC4A8 chr12 51391317 51515763 + MRRF chr9 122264603 122331337 + MCM7 chr7 100092728 100101940 - DVL3 chr3 184155377 184173614 + GJA1 chr6 121435595 121449727 + MTA1 chr14 105419820 105470729 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - hsa-miR-1270 chr19 20399320 20399342 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC026740.1 chr5 675826 676616 + AL139819.1 chr10 100335563 100346390 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA