exRNAdisease

Entry Detail

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General Information

Database ID: exR0374104 RNA Name: AP2M1 RNA Type: mRNA Chromosome: chr3 Starnd: + Coordinate: Start Site(bp): 184174689 End Site(bp): 184184091 External Links: ENSG00000161203

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010422.3 chr19 12643831 12648397 - AC011448.1 chr19 19516227 19536076 + AC087289.3 chr17 75898645 75930129 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR1A chr10 102461881 102502712 - ACVR2B chr3 38453890 38493142 + ADGRG1 chr16 57610652 57665580 + AGBL2 chr11 47659591 47715389 - AGBL5 chr2 27042364 27070622 + AGPS chr2 177392757 177559299 + AIP chr11 67483026 67491103 + AK4 chr1 65147549 65232145 + AKIRIN2 chr6 87674860 87702233 - AKT1 chr14 104769349 104795751 - AL133352.1 chr10 100505628 100529881 - AL136454.1 chr1 192716132 192716653 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3652 chr12 103930425 103930442 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005899.4 chr17 32328441 32329395 + AC006141.1 chr17 51249579 51251748 - AC079781.5 chr7 97851688 97972985 - AC092490.1 chr12 8788253 8795789 + AC099329.1 chr3 42785087 42852428 - AGAP1-IT1 chr2 235505751 235507566 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA