exRNAdisease

Entry Detail

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General Information

Database ID: exR0374136 RNA Name: APEX1 RNA Type: mRNA Chromosome: chr14 Starnd: + Coordinate: Start Site(bp): 20455191 End Site(bp): 20457772 External Links: ENSG00000100823

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - ABHD17B chr9 71862452 71910931 - ABTB1 chr3 127672935 127680926 + AC010422.3 chr19 12643831 12648397 - AC068946.1 chr2 219075329 219170827 - AC073508.2 chr17 40627356 40665141 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ADAM15 chr1 155050566 155062775 + ADAMTS6 chr5 65148738 65481920 - ADGRL1 chr19 14147743 14206187 - AHCY chr20 34280268 34311802 - AIF1L chr9 131096476 131123152 + AL109827.1 chr20 35632340 35674544 - ALDH16A1 chr19 49453225 49471050 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.2 chr17 19092974 19096837 + AC132217.1 chr11 2129121 2129964 - AL021707.1 chr22 38739003 38749041 + AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA