exRNAdisease

Entry Detail

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General Information

Database ID: exR0374210 RNA Name: ARF1 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 228082660 End Site(bp): 228099212 External Links: ENSG00000143761

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.6 chr12 6556886 6607367 - AC011455.2 chr19 38915404 38949855 - AC073610.2 chr12 48903503 48957365 - ACADVL chr17 7217125 7225266 + ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTN4 chr19 38647649 38731589 + ACTR10 chr14 58200080 58235636 + ACTR2 chr2 65227753 65271253 + ADGRA2 chr8 37784191 37844896 + AFDN chr6 167826922 167972023 + AGO4 chr1 35808016 35857890 + AGPAT2 chr9 136673143 136687457 - AGPAT3 chr21 43865223 43987592 + AIMP2 chr7 6009255 6023834 + AKAP8L chr19 15380050 15419141 - AKAP9 chr7 91940867 92110673 + AL713999.1 chr1 155169409 155187272 - ALDH5A1 chr6 24494867 24537207 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3610 chr8 116874740 116874759 - hsa-miR-3620-3p chr1 228097320 228097341 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC026362.1 chr12 122975320 122982907 + AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA