exRNAdisease

Entry Detail

---



General Information

Database ID: exR0374287 RNA Name: ARID1A RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 26693236 End Site(bp): 26782104 External Links: ENSG00000117713

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABI1 chr10 26746593 26861087 - AC009133.6 chr16 29812261 29820092 + AC010422.3 chr19 12643831 12648397 - AC244197.3 chrX 149477104 149540926 - ACSF3 chr16 89088375 89164121 + ACTN4 chr19 38647649 38731589 + ADCY6 chr12 48766194 48789037 - AKAP13 chr15 85380571 85749358 + AL133352.1 chr10 100505628 100529881 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-1321 chrX 85835832 85835849 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012676.1 chr16 4335870 4337818 - AC021078.1 chr5 149494314 149504670 - AC025271.4 chr15 57553955 57555680 + AC124068.2 chr15 89335053 89336161 + AC245014.3 chr1 145281116 145281462 + AL136985.3 chr1 58715609 58771295 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA