exRNAdisease

Entry Detail

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General Information

Database ID: exR0374573 RNA Name: ATXN10 RNA Type: mRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 45671798 End Site(bp): 45845307 External Links: ENSG00000130638

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACTB chr7 5527148 5563784 - ADAMTS13 chr9 133414358 133459402 + ADAMTS19 chr5 129460281 129738683 + ADD1 chr4 2843857 2930076 + ADO chr10 62804720 62808479 + AL031708.1 chr16 1632259 1686715 + AL133352.1 chr10 100505628 100529881 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC091564.7 chr11 6610883 6616594 - AC245452.1 chr22 21938269 21977632 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA