exRNAdisease

Entry Detail

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General Information

Database ID: exR0374610 RNA Name: B2M RNA Type: mRNA Chromosome: chr15 Starnd: + Coordinate: Start Site(bp): 44711487 End Site(bp): 44718877 External Links: ENSG00000166710

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC138811.2 chr16 18788063 18801519 - ADAR chr1 154582057 154628013 - AGPAT5 chr8 6708642 6761503 + AC011511.1 chr19 10305427 10316009 - AIFM1 chrX 130129362 130165887 - AK4 chr1 65147549 65232145 + ACLY chr17 41866917 41930542 - ABT1 chr6 26596953 26600739 + AK2 chr1 33007940 33080996 - ACADSB chr10 123008979 123058290 + ACP5 chr19 11574660 11579008 - ACP1 chr2 264140 278283 + ALDOA chr16 30064164 30070457 + AC104109.3 chr5 134167170 134226071 - ACADM chr1 75724347 75787575 + ACTB chr7 5527148 5563784 - ACAD9 chr3 128879596 128916067 + ADM chr11 10305073 10307397 + AHSA1 chr14 77457870 77469472 + AHCY chr20 34280268 34311802 - ACBD5 chr10 27195214 27242130 - ACADVL chr17 7217125 7225266 + ABI1 chr10 26746593 26861087 - ACAT2 chr6 159762045 159779112 + ADCY3 chr2 24819169 24919839 - AC003005.1 chr19 57487718 57517559 + AJUBA chr14 22971177 22982551 - ACOT1 chr14 73537143 73543796 + ALDH5A1 chr6 24494867 24537207 + ACTR3 chr2 113890063 113962596 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-142-3p chr17 58331245 58331267 - hsa-miR-1244 chr2 231713368 231713393 + hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC007114.1 chr17 57071814 57085024 - AC007952.4 chr17 19112000 19112636 - AC010247.1 chr19 42132555 42137099 + AC010327.5 chr19 55216660 55221616 + AC026464.2 chr16 69463844 69466264 + AC074032.1 chr12 50112197 50165618 + AC091965.4 chr5 8444949 8445535 - AC093157.1 chr1 101025844 101090513 + AC139149.1 chr17 81514047 81527776 + AC144548.1 chr12 110387463 110445548 - AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA