exRNAdisease

Entry Detail

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General Information

Database ID: exR0374645 RNA Name: BABAM1 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 17267376 End Site(bp): 17281249 External Links: ENSG00000105393

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - ABCE1 chr4 145098288 145129524 + ABRACL chr6 139028745 139043302 + ABT1 chr6 26596953 26600739 + AC009133.6 chr16 29812261 29820092 + AC010463.1 chr19 17267418 17282966 + AC011511.4 chr19 10315471 10320678 - AC245033.1 chr15 82536788 82573194 - ACTB chr7 5527148 5563784 - AFDN chr6 167826922 167972023 + AKAP5 chr14 64465499 64474503 + AKIRIN1 chr1 38991276 39006059 + ALDH3A2 chr17 19648136 19685760 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010186.3 chr12 9658567 9662085 + AC016876.2 chr17 7581964 7584086 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA