exRNAdisease

Entry Detail

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General Information

Database ID: exR0374656 RNA Name: BAG6 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 31639028 End Site(bp): 31652705 External Links: ENSG00000204463

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB8 chr7 151028422 151047782 + ABHD16A chr6 31686955 31703356 - AC005258.1 chr19 2269525 2341172 + AC040162.1 chr16 67929614 67936017 - AC104472.3 chr3 155763043 155854442 - ACTB chr7 5527148 5563784 - ACTR1B chr2 97655939 97664044 - ADA chr20 44619522 44652233 - ADAMTSL4 chr1 150549369 150560937 + ADSL chr22 40346500 40390463 + AKT1 chr14 104769349 104795751 - AL022238.4 chr22 40346529 40410054 + AL669918.1 chr6 32813767 32838822 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6850-5p chr8 144791970 144791991 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC023509.1 chr12 53441741 53467528 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL079343.1 chr14 26592747 26594517 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA