exRNAdisease

Entry Detail

General Information

Database ID:

exR0374695

RNA Name:

BCAM

RNA Type:

mRNA

Chromosome:

chr19

Starnd:

+

Coordinate:

Start Site(bp):

44809071

End Site(bp):

44821421

External Links:

ENSG00000187244

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC010422.3	chr19	12643831	12648397	-
ADIPOR1	chr1	202940826	202958572	-
AL365205.1	chr6	41780349	41790141	+
ALDH4A1	chr1	18871430	18902724	-

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-let-7a-5p	chr9	94175962	94175983	+
hsa-let-7b-5p	chr22	46113691	46113712	+
hsa-let-7d-5p	chr9	94178841	94178862	+
hsa-let-7e-5p	chr19	51692793	51692814	+
hsa-miR-654-5p	chr14	101040234	101040255	+
hsa-miR-6506-3p	chr16	15611031	15611052	-

circRNA targets:

NA

lncRNA targets:

NA

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA