exRNAdisease

Entry Detail

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General Information

Database ID: exR0374869 RNA Name: BRD2 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 32968594 End Site(bp): 32981505 External Links: ENSG00000204256

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD15 chr17 29560547 29567037 - ABHD2 chr15 89087459 89202355 + ABL1 chr9 130713016 130887675 + AC006030.1 chr2 74211604 74363377 - AC073612.1 chr12 71674204 71698968 + AC092143.1 chr16 89919165 89936092 + AC098850.3 chr17 16690261 16804453 + AC104532.1 chr19 5904841 5914707 + AKIRIN2 chr6 87674860 87702233 - AL162417.1 chr9 133098121 133163914 - AL358113.1 chr9 69035747 69255187 + ALDH5A1 chr6 24494867 24537207 + ALDH6A1 chr14 74056847 74084492 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC021078.1 chr5 149494314 149504670 - AC105339.2 chr15 82752884 82757208 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA