exRNAdisease

Entry Detail

---



General Information

Database ID: exR0374898 RNA Name: BSG RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 571277 End Site(bp): 583493 External Links: ENSG00000172270

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + ABCC5 chr3 183919934 184017939 - ABCF1 chr6 30571393 30597179 + AC005258.1 chr19 2269525 2341172 + AC010422.3 chr19 12643831 12648397 - AC011005.1 chr7 129126518 129130793 + AC012531.3 chr12 53985845 54034888 + AC058822.1 chr4 53377839 54295272 + AC104109.3 chr5 134167170 134226071 - AC245033.1 chr15 82536788 82573194 - ACBD4 chr17 45132600 45144181 + ACO2 chr22 41469117 41528989 + ACTB chr7 5527148 5563784 - ACVR2B chr3 38453890 38493142 + ADH5 chr4 99070978 99088801 - ADPRHL2 chr1 36088892 36093932 + ADRA1D chr20 4220630 4249287 - AGAP3 chr7 151085831 151144436 + AGAP4 chr10 45825594 45853875 - AGFG1 chr2 227472152 227561214 + AGPAT4 chr6 161129967 161274061 - AHCY chr20 34280268 34311802 - AHNAK chr11 62433542 62556235 - AKAP17A chrX 1591604 1602520 + AKT1 chr14 104769349 104795751 - AL133352.1 chr10 100505628 100529881 - AL139353.1 chr14 31334312 31457441 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-664b-5p chrX 154768596 154768619 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007161.3 chr7 7640752 8004053 + AC007952.4 chr17 19112000 19112636 - AC012531.2 chr12 54017110 54035361 + AC124068.2 chr15 89335053 89336161 + AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL035458.2 chr20 34234840 34281173 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA