exRNAdisease

Entry Detail

---



General Information

Database ID: exR0374941 RNA Name: BUB3 RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 123154402 End Site(bp): 123170467 External Links: ENSG00000154473

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA3 chr16 2275881 2340746 - ABCC5 chr3 183919934 184017939 - ABI2 chr2 203328239 203447728 + AC010422.3 chr19 12643831 12648397 - ACADSB chr10 123008979 123058290 + ACTB chr7 5527148 5563784 - ACTR2 chr2 65227753 65271253 + ADSL chr22 40346500 40390463 + AGAP3 chr7 151085831 151144436 + AK4 chr1 65147549 65232145 + AKNA chr9 114334156 114394405 - AL022238.4 chr22 40346529 40410054 + AL121594.1 chr14 35122549 35317474 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC023509.1 chr12 53441741 53467528 + AD000090.1 chr19 35557956 35581954 + AF117829.1 chr8 89585872 89757812 - AL031779.1 chr6 56331788 56332117 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA