exRNAdisease

Entry Detail

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General Information

Database ID: exR0376073 RNA Name: CHD4 RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 6570082 End Site(bp): 6614524 External Links: ENSG00000111642

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABL1 chr9 130713016 130887675 + AC004832.3 chr22 30409255 30428990 + AC005943.1 chr19 1578339 1605445 - AC006064.6 chr12 6556886 6607367 - AC008763.3 chr19 7678501 7682854 + AC015813.2 chr17 57989038 58007246 - AC027796.3 chr17 3585149 3636249 - AC119674.2 chr1 56173433 56524495 - AC131160.1 chr3 183815568 183884889 - AC245033.1 chr15 82536788 82573194 - ACADS chr12 120725774 120740008 + ACD chr16 67657512 67660815 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR2 chr2 65227753 65271253 + ADAMTS7 chr15 78759206 78811464 - ADGRV1 chr5 90529344 91164437 + AHSA1 chr14 77457870 77469472 + AK3 chr9 4709556 4742043 - AKT1 chr14 104769349 104795751 - AL033529.1 chr1 32465057 32600792 + ALAD chr9 113386312 113401290 - ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010327.5 chr19 55216660 55221616 + AC020663.1 chr16 4730115 4752565 - AC132217.1 chr11 2129121 2129964 - AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA