exRNAdisease

Entry Detail

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General Information

Database ID: exR0376243 RNA Name: CLDN6 RNA Type: mRNA Chromosome: chr16 Starnd: - Coordinate: Start Site(bp): 3014712 End Site(bp): 3020071 External Links: ENSG00000184697

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB4 chr7 87401697 87480435 - AC008982.1 chr19 38817471 38840178 - AC068946.2 chr2 219209772 219222738 - AC092143.1 chr16 89919165 89936092 + AC093323.1 chr4 6663396 6676755 + AC096887.1 chr3 52969119 53099453 - AC138811.2 chr16 18788063 18801519 - ACTA1 chr1 229431245 229434098 - ACTG1 chr17 81509971 81523847 - ADD3 chr10 109996368 110135565 + AHCY chr20 34280268 34311802 - AHNAK chr11 62433542 62556235 - AL109827.1 chr20 35632340 35674544 - AL133352.1 chr10 100505628 100529881 - ALDH1B1 chr9 38392702 38398661 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-19b-3p chr13 91351245 91351267 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012306.2 chr2 127886556 127887185 + AC012531.2 chr12 54017110 54035361 + AC016876.2 chr17 7581964 7584086 - AC023794.3 chr12 54163139 54168595 + AC026362.1 chr12 122975320 122982907 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA