exRNAdisease

Entry Detail

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General Information

Database ID: exR0376800 RNA Name: CTNNA1 RNA Type: mRNA Chromosome: chr5 Starnd: + Coordinate: Start Site(bp): 138610967 End Site(bp): 138935034 External Links: ENSG00000044115

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAK1 chr2 69457997 69674349 - AAMP chr2 218264123 218270257 - AC011455.2 chr19 38915404 38949855 - AC099811.2 chr17 42119674 42154916 - ACIN1 chr14 23058564 23095614 - ACSL3 chr2 222860942 222944639 + ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ADA2 chr22 17178790 17258235 - ADARB1 chr21 45073853 45226560 + ADD3 chr10 109996368 110135565 + ADH5 chr4 99070978 99088801 - ADNP chr20 50888916 50931437 - ADNP2 chr18 80109262 80147523 + ADSL chr22 40346500 40390463 + AGPAT1 chr6 32168212 32178096 - AIG1 chr6 143060496 143341058 + AKAP8 chr19 15353385 15379798 - AL022238.4 chr22 40346529 40410054 + AL603832.3 chr1 112702614 112711433 - ALDH16A1 chr19 49453225 49471050 + ALDH2 chr12 111766887 111817532 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-320a-3p chr8 22244975 22244996 - hsa-miR-7705 chr8 100703002 100703024 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007405.3 chr2 170814686 170818037 - AC018521.1 chr17 47945424 47981736 + AC026304.1 chr3 143000907 143001467 - AC092490.1 chr12 8788253 8795789 + AC138035.1 chr5 181306502 181324685 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA