exRNAdisease

Entry Detail

---



General Information

Database ID: exR0377000 RNA Name: DAG1 RNA Type: mRNA Chromosome: chr3 Starnd: + Coordinate: Start Site(bp): 49468703 End Site(bp): 49535618 External Links: ENSG00000173402

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004922.1 chr7 99325879 99394653 + AC010422.3 chr19 12643831 12648397 - AC073896.1 chr12 56285916 56316059 - AC093525.2 chr16 2496032 2520218 + ACOXL chr2 110732573 111118222 + ADD1 chr4 2843857 2930076 + AGK chr7 141551278 141655244 + AGPAT1 chr6 32168212 32178096 - AHCY chr20 34280268 34311802 - AHCYL1 chr1 109984765 110023742 + AHNAK chr11 62433542 62556235 - AL136454.1 chr1 192716132 192716653 + ALDH3B2 chr11 67662160 67681224 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-330-3p chr19 45639009 45639031 - hsa-miR-331-3p chr12 95308480 95308500 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009022.1 chr16 69976297 70065948 - AC016876.2 chr17 7581964 7584086 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA