exRNAdisease

Entry Detail

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General Information

Database ID: exR0377096 RNA Name: DDB1 RNA Type: mRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 61299451 End Site(bp): 61342596 External Links: ENSG00000167986

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMP chr2 218264123 218270257 - ABCB8 chr7 151028422 151047782 + ABI2 chr2 203328239 203447728 + ABRACL chr6 139028745 139043302 + AC005258.1 chr19 2269525 2341172 + AC008982.1 chr19 38817471 38840178 - AC011448.1 chr19 19516227 19536076 + AC118549.1 chr1 77562416 77683419 - ACBD6 chr1 180269653 180502954 - ACIN1 chr14 23058564 23095614 - ACSL1 chr4 184755595 184826818 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR3 chr2 113890063 113962596 + ACTR8 chr3 53867066 53882152 - ADAMTS1 chr21 26835755 26845409 - ADAR chr1 154582057 154628013 - ADGRG6 chr6 142301854 142446266 + AGO2 chr8 140520156 140635633 - AGPAT4 chr6 161129967 161274061 - AJUBA chr14 22971177 22982551 - AKR7A2 chr1 19303965 19312146 - AKT1 chr14 104769349 104795751 - AKT1S1 chr19 49869033 49878459 - AL133352.1 chr10 100505628 100529881 - AL136454.1 chr1 192716132 192716653 + AL139011.2 chr1 160216800 160285130 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-367-3p chr4 112647877 112647898 - hsa-miR-155-3p chr21 25574022 25574043 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012485.1 chr2 238231684 238255633 + AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC124068.2 chr15 89335053 89336161 + AC133644.3 chr2 87455476 87767359 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA