exRNAdisease

Entry Detail

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General Information

Database ID: exR0377105 RNA Name: DDIT4 RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 72273924 End Site(bp): 72276036 External Links: ENSG00000168209

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABI2 chr2 203328239 203447728 + AC005258.1 chr19 2269525 2341172 + AC006064.6 chr12 6556886 6607367 - AC008982.1 chr19 38817471 38840178 - AC010422.3 chr19 12643831 12648397 - AC011462.1 chr19 41350853 41425001 + AC011511.4 chr19 10315471 10320678 - AC068547.1 chr2 151802651 151973949 - AC092143.1 chr16 89919165 89936092 + AC139530.2 chr17 81703371 81720539 + ACLY chr17 41866917 41930542 - ACTA2 chr10 88935074 88991339 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR1B chr2 97655939 97664044 - ADAMTS12 chr5 33523535 33892019 - ADAR chr1 154582057 154628013 - ADH5 chr4 99070978 99088801 - ADM chr11 10305073 10307397 + ADRM1 chr20 62302093 62308862 + AGFG1 chr2 227472152 227561214 + AHCYL1 chr1 109984765 110023742 + AIFM1 chrX 130129362 130165887 - AK2 chr1 33007940 33080996 - AKNA chr9 114334156 114394405 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-221-3p chrX 45746180 45746202 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004771.3 chr17 4967995 4968822 + AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC025165.5 chr12 57803838 57804415 + AC135048.1 chr16 30948386 30956511 + AC234582.1 chr1 155195004 155205495 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA