exRNAdisease

Entry Detail

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General Information

Database ID: exR0377131 RNA Name: DDX39B RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 31530219 End Site(bp): 31542448 External Links: ENSG00000198563

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - ABCC1 chr16 15949577 16143074 + AC004922.1 chr7 99325879 99394653 + AC010132.3 chr7 42909273 42932174 - AC010323.1 chr19 8308283 8321379 - AC011530.1 chr19 45779437 45785973 - AC020915.5 chr19 58228914 58315183 + AC124312.1 chr15 24955034 25000276 + ACADM chr1 75724347 75787575 + ACAP3 chr1 1292390 1309609 - ACAT2 chr6 159762045 159779112 + ACSL3 chr2 222860942 222944639 + ADCY9 chr16 3953387 4116442 - ADGRG6 chr6 142301854 142446266 + AFF1 chr4 86935002 87141054 + AHCYL1 chr1 109984765 110023742 + AHNAK chr11 62433542 62556235 - AL365205.1 chr6 41780349 41790141 + ALDH16A1 chr19 49453225 49471050 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC016876.2 chr17 7581964 7584086 - AC067852.2 chr17 42552436 42554748 - AC109460.3 chr16 28974804 28990775 + AC115284.1 chr3 51961212 51974031 - AC120114.1 chr16 29926836 29928933 + AC144548.1 chr12 110387463 110445548 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA