exRNAdisease

Entry Detail

---



General Information

Database ID: exR0377141 RNA Name: DDX5 RNA Type: mRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 64498254 End Site(bp): 64508199 External Links: ENSG00000108654

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB4 chr7 87401697 87480435 - ABCB7 chrX 75051048 75156732 - ABCF2 chr7 151207837 151227166 - AC005258.1 chr19 2269525 2341172 + AC010132.3 chr7 42909273 42932174 - AC010422.3 chr19 12643831 12648397 - AC024592.3 chr19 5866171 5903787 - AC048338.1 chr12 122207779 122266423 - AC093525.2 chr16 2496032 2520218 + AC120057.2 chr17 7240427 7244635 - AC245033.1 chr15 82536788 82573194 - ACOT13 chr6 24667035 24705065 + ACSS2 chr20 34872146 34927962 + ADA2 chr22 17178790 17258235 - ADIPOR2 chr12 1688574 1788674 + AFDN chr6 167826922 167972023 + AGFG2 chr7 100539203 100568220 + AGO1 chr1 35869808 35930532 + AGO4 chr1 35808016 35857890 + AGPAT5 chr8 6708642 6761503 + AHDC1 chr1 27534035 27604431 - AKAP12 chr6 151239967 151358559 + AKIRIN1 chr1 38991276 39006059 + AL133352.1 chr10 100505628 100529881 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-33a-5p chr22 41900949 41900969 + hsa-miR-141-3p chr12 6964155 6964176 + hsa-miR-206 chr6 52144401 52144422 + hsa-miR-302b-3p chr4 112648489 112648511 - hsa-miR-33b-5p chr17 17813897 17813916 - hsa-miR-3064-5p chr17 64500817 64500837 - hsa-miR-3064-3p chr17 64500775 64500797 - hsa-miR-5047 chr17 64501230 64501250 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020663.1 chr16 4730115 4752565 - AC023509.1 chr12 53441741 53467528 + AC079781.5 chr7 97851688 97972985 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA