exRNAdisease

Entry Detail

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General Information

Database ID: exR0377609 RNA Name: DYNC1H1 RNA Type: mRNA Chromosome: chr14 Starnd: + Coordinate: Start Site(bp): 101964573 End Site(bp): 102056443 External Links: ENSG00000197102

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + AC090004.1 chr3 14135217 14148252 + AC093525.1 chr16 2513965 2527955 + AC093525.2 chr16 2496032 2520218 + AC104109.3 chr5 134167170 134226071 - AC138969.1 chr16 16317444 16350590 + AC245033.1 chr15 82536788 82573194 - ACAA2 chr18 49782164 49813953 - ADAMTS15 chr11 130448974 130476641 + ADCY3 chr2 24819169 24919839 - ADD2 chr2 70607618 70768225 - AGRN chr1 1020120 1056118 + AIF1L chr9 131096476 131123152 + AK3 chr9 4709556 4742043 - AKAP1 chr17 57085092 57121346 + AL139300.1 chr14 103562962 103685924 + AL162417.1 chr9 133098121 133163914 - ALDH18A1 chr10 95605941 95656711 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-21-5p chr17 59841273 59841294 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005899.4 chr17 32328441 32329395 + AC008124.1 chr12 45718046 45727775 - AC110285.2 chr17 81388126 81390319 - AC245014.3 chr1 145281116 145281462 + AL022157.1 chrX 57121662 57127243 + AL110115.2 chr20 31580890 31581214 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA