exRNAdisease

Entry Detail

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General Information

Database ID: exR0377695 RNA Name: EEF1D RNA Type: mRNA Chromosome: chr8 Starnd: - Coordinate: Start Site(bp): 143579697 End Site(bp): 143599541 External Links: ENSG00000104529

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMP chr2 218264123 218270257 - ABCA2 chr9 137007234 137028922 - ABCC5 chr3 183919934 184017939 - ABHD10 chr3 111979010 111993368 + AC012184.2 chr16 70299194 70372582 + AC074143.1 chr16 67163385 67165815 + AC090004.1 chr3 14135217 14148252 + AC092143.1 chr16 89919165 89936092 + AC092647.5 chr7 55887277 55955239 + AC093525.2 chr16 2496032 2520218 + AC244197.3 chrX 149477104 149540926 - AC245033.1 chr15 82536788 82573194 - ACLY chr17 41866917 41930542 - ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTC1 chr15 34790230 34795549 - ACTG1 chr17 81509971 81523847 - ACTR3 chr2 113890063 113962596 + ADGRE5 chr19 14380501 14408725 + AFMID chr17 78187317 78207701 + AHCYL2 chr7 129225023 129430211 + AL713999.1 chr1 155169409 155187272 - ALDH9A1 chr1 165662216 165698863 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4517 chr16 28958587 28958611 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC067930.1 chr8 143579636 143580670 + AC069281.2 chr7 100572232 100578700 - AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL132780.1 chr14 22929607 22956374 + AL133166.1 chr14 29210986 29392048 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA