exRNAdisease

Entry Detail

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General Information

Database ID: exR0377761 RNA Name: EIF1 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 41688885 End Site(bp): 41692668 External Links: ENSG00000173812

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABL1 chr9 130713016 130887675 + AC007040.2 chr2 70939318 70995336 - AC011511.4 chr19 10315471 10320678 - AC067968.1 chr19 44025354 44087318 + AC091167.2 chr15 90249556 90272208 + AC091167.6 chr15 90266317 90314499 + AC092647.5 chr7 55887277 55955239 + AC099811.2 chr17 42119674 42154916 - AC104109.3 chr5 134167170 134226071 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADRA2C chr4 3766348 3768526 + AGO1 chr1 35869808 35930532 + AKIP1 chr11 8911139 8920084 + ALDH6A1 chr14 74056847 74084492 - ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC016065.1 chr8 6403551 6407142 - AC018521.1 chr17 47945424 47981736 + AC026362.1 chr12 122975320 122982907 + AL121992.1 chr1 15586136 15603626 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA