exRNAdisease

Entry Detail

---



General Information

Database ID: exR0377785 RNA Name: EIF3E RNA Type: mRNA Chromosome: chr8 Starnd: - Coordinate: Start Site(bp): 108201216 End Site(bp): 108435333 External Links: ENSG00000104408

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABLIM1 chr10 114431113 114768061 - AC008764.4 chr19 16577642 16660115 - AC009133.6 chr16 29812261 29820092 + AC012184.2 chr16 70299194 70372582 + AC048338.1 chr12 122207779 122266423 - AC079447.1 chr2 99141485 99322741 + AC092587.1 chr2 99154998 99195298 + AC104452.1 chr3 49416777 49429314 - AC120057.2 chr17 7240427 7244635 - ACTB chr7 5527148 5563784 - ADK chr10 74151202 74709963 + AHCY chr20 34280268 34311802 - AL136454.1 chr1 192716132 192716653 + ALCAM chr3 105366909 105576900 + ALDH1B1 chr9 38392702 38398661 + ALDH5A1 chr6 24494867 24537207 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-93-5p chr7 100093815 100093837 - hsa-miR-4284 chr7 73711327 73711344 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010618.3 chr19 17488990 17511889 - AC021078.1 chr5 149494314 149504670 - AC124312.5 chr15 25091786 25107469 - AC132217.1 chr11 2129121 2129964 - AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA