exRNAdisease

Entry Detail

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General Information

Database ID: exR0377794 RNA Name: EIF4A1 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 7572706 End Site(bp): 7579006 External Links: ENSG00000161960

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA2 chr9 137007234 137028922 - ABCB8 chr7 151028422 151047782 + ABRACL chr6 139028745 139043302 + AC004080.3 chr7 27163535 27180013 - AC004922.1 chr7 99325879 99394653 + AC004997.1 chr22 30285238 30299482 - AC010463.1 chr19 17267418 17282966 + AC011511.4 chr19 10315471 10320678 - AC026464.4 chr16 69299682 69322700 + AC048338.1 chr12 122207779 122266423 - AC073896.1 chr12 56285916 56316059 - AC092143.1 chr16 89919165 89936092 + AC245033.1 chr15 82536788 82573194 - ACSS3 chr12 80936414 81261210 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ADPGK chr15 72751369 72785846 - AFAP1 chr4 7758714 7939926 - AGPAT1 chr6 32168212 32178096 - AHCY chr20 34280268 34311802 - AK1 chr9 127866486 127877675 - AKAP1 chr17 57085092 57121346 + AL139300.1 chr14 103562962 103685924 + ALDH18A1 chr10 95605941 95656711 - ALDH7A1 chr5 126531200 126595362 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-28-5p chr3 188688794 188688815 + hsa-miR-129-5p chr7 128207876 128207896 + hsa-miR-330-5p chr19 45639049 45639070 - hsa-miR-1294 chr5 154347153 154347174 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.5 chr12 6510275 6510522 + AC007952.4 chr17 19112000 19112636 - AC010542.4 chr16 66549280 66551189 + AC016876.2 chr17 7581964 7584086 - AC064802.1 chr8 114282067 114295839 + AC132217.1 chr11 2129121 2129964 - AC135050.5 chr16 31118078 31118747 + AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL008721.2 chr22 25476218 25479971 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA