exRNAdisease

Entry Detail

---



General Information

Database ID: exR0378082 RNA Name: EWSR1 RNA Type: mRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 29268009 End Site(bp): 29300525 External Links: ENSG00000182944

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA1 chr9 104781006 104928155 - ABCE1 chr4 145098288 145129524 + ABHD4 chr14 22598237 22613215 + AC010422.3 chr19 12643831 12648397 - AC026954.2 chr17 7312661 7319174 - AC120057.2 chr17 7240427 7244635 - ACD chr16 67657512 67660815 - ACSL4 chrX 109624244 109733403 - ACTG1 chr17 81509971 81523847 - ACTR1B chr2 97655939 97664044 - ACVR1 chr2 157736444 157876330 - ADH5 chr4 99070978 99088801 - AHCYL1 chr1 109984765 110023742 + AIP chr11 67483026 67491103 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6777-5p chr17 17813518 17813540 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA