exRNAdisease

Entry Detail

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General Information

Database ID: exR0378124 RNA Name: EZR RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 158765741 End Site(bp): 158819368 External Links: ENSG00000092820

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABRACL chr6 139028745 139043302 + AC004922.1 chr7 99325879 99394653 + AC010132.3 chr7 42909273 42932174 - AC092143.1 chr16 89919165 89936092 + AC245033.1 chr15 82536788 82573194 - ACAT1 chr11 108116695 108147603 + ACKR3 chr2 236567787 236582354 + ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - ACTR3 chr2 113890063 113962596 + ADH5 chr4 99070978 99088801 - ADIPOR1 chr1 202940826 202958572 - ADSL chr22 40346500 40390463 + AFDN chr6 167826922 167972023 + AGBL5 chr2 27042364 27070622 + AGPAT2 chr9 136673143 136687457 - AL022238.4 chr22 40346529 40410054 + AL136295.4 chr14 24180395 24190416 - AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010733.2 chr2 60925909 60931610 + AC023509.1 chr12 53441741 53467528 + AC106864.1 chr4 112693047 112706810 - AC110619.1 chr2 240449315 240456714 - AC126365.1 chr17 20788071 20789584 + AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA