exRNAdisease

Entry Detail

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General Information

Database ID: exR0378156 RNA Name: FADS2 RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 61792980 End Site(bp): 61867354 External Links: ENSG00000134824

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF2 chr7 151207837 151227166 - ABRAXAS1 chr4 83459517 83523348 - AC010422.3 chr19 12643831 12648397 - AC010463.1 chr19 17267418 17282966 + AC013394.1 chr15 92883413 92949230 + AC067968.1 chr19 44025354 44087318 + AC245033.1 chr15 82536788 82573194 - ACSL1 chr4 184755595 184826818 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADCY6 chr12 48766194 48789037 - AEN chr15 88621337 88632281 + AGA chr4 177430774 177442437 - AIFM1 chrX 130129362 130165887 - AKAP8L chr19 15380050 15419141 - AKT2 chr19 40230317 40285536 - AL121594.1 chr14 35122549 35317474 + AL133352.1 chr10 100505628 100529881 - AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-432-5p chr14 100884496 100884518 + hsa-miR-1321 chrX 85835832 85835849 + hsa-miR-4485-3p chr11 10508277 10508296 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004224.2 chr16 3458071 3515564 + AC023509.1 chr12 53441741 53467528 + AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA