exRNAdisease

Entry Detail

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General Information

Database ID: exR0378599 RNA Name: FKBP8 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 18531751 End Site(bp): 18544077 External Links: ENSG00000105701

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA5 chr17 69244311 69327244 - ABCC4 chr13 95019835 95301475 - ABR chr17 1003518 1229738 - AC007192.1 chr19 18153158 18178117 + AC008878.3 chr19 7382834 7470241 + AC010132.3 chr7 42909273 42932174 - AC012184.2 chr16 70299194 70372582 + AC024592.3 chr19 5866171 5903787 - AC055811.2 chr17 17202649 17237185 - AC073896.1 chr12 56285916 56316059 - AC138811.2 chr16 18788063 18801519 - ACAT2 chr6 159762045 159779112 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR1A chr10 102461881 102502712 - ADCK5 chr8 144373101 144393242 + ADGRE2 chr19 14732392 14778560 - ADGRL1 chr19 14147743 14206187 - ADO chr10 62804720 62808479 + AEN chr15 88621337 88632281 + AFDN chr6 167826922 167972023 + AGPAT3 chr21 43865223 43987592 + AHCTF1 chr1 246839098 246931967 - AIFM1 chrX 130129362 130165887 - AKAP10 chr17 19904302 19978343 - AKNA chr9 114334156 114394405 - AL365205.1 chr6 41780349 41790141 + AL603832.3 chr1 112702614 112711433 - ALCAM chr3 105366909 105576900 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3652 chr12 103930425 103930442 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005899.4 chr17 32328441 32329395 + AC010615.2 chr19 21444241 21463908 - AC026362.1 chr12 122975320 122982907 + AC069281.2 chr7 100572232 100578700 - AC074183.1 chr7 84939349 84940245 - AC099778.1 chr3 47379089 47380999 - AC106864.1 chr4 112693047 112706810 - AC109460.3 chr16 28974804 28990775 + AC113189.2 chr17 7420103 7444081 + AC113189.4 chr17 7439506 7445966 + AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA