exRNAdisease

Entry Detail

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General Information

Database ID: exR0378758 RNA Name: FSTL1 RNA Type: mRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 120392293 End Site(bp): 120450993 External Links: ENSG00000163430

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD6 chr3 58237532 58295693 + ABHD8 chr19 17292131 17310236 - ABL1 chr9 130713016 130887675 + AC004922.1 chr7 99325879 99394653 + AC068580.4 chr11 1734821 1763954 - AC073508.2 chr17 40627356 40665141 - ACTG1 chr17 81509971 81523847 - ACTN1 chr14 68874143 68979440 - ACTR2 chr2 65227753 65271253 + ADAR chr1 154582057 154628013 - AGPAT1 chr6 32168212 32178096 - AHNAK chr11 62433542 62556235 - AIF1L chr9 131096476 131123152 + AKR1B1 chr7 134442356 134459284 - AL049844.3 chr6 143857318 143938471 + AL139011.2 chr1 160216800 160285130 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-613 chr12 12764709 12764728 + hsa-miR-198 chr3 120395703 120395724 - hsa-miR-7705 chr8 100703002 100703024 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC018521.1 chr17 47945424 47981736 + AC020928.1 chr19 36773112 36777078 + AC023509.1 chr12 53441741 53467528 + AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA