exRNAdisease

Entry Detail

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General Information

Database ID: exR0378778 RNA Name: FUS RNA Type: mRNA Chromosome: chr16 Starnd: + Coordinate: Start Site(bp): 31180110 End Site(bp): 31194871 External Links: ENSG00000089280

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - ACTN4 chr19 38647649 38731589 + ADCY6 chr12 48766194 48789037 - AC091167.2 chr15 90249556 90272208 + AC007192.1 chr19 18153158 18178117 + AHCY chr20 34280268 34311802 - AAMP chr2 218264123 218270257 - AC010422.3 chr19 12643831 12648397 - ABRACL chr6 139028745 139043302 + ACTR2 chr2 65227753 65271253 + AC093525.1 chr16 2513965 2527955 + AFDN chr6 167826922 167972023 + AL365205.1 chr6 41780349 41790141 + AEBP2 chr12 19404045 19720801 + AC093525.2 chr16 2496032 2520218 + ACTR5 chr20 38748460 38772520 + ACTB chr7 5527148 5563784 - AL359736.1 chr13 23979700 24321031 + AC005832.4 chr12 4604944 4662643 + AKT1S1 chr19 49869033 49878459 - AC092143.1 chr16 89919165 89936092 + ALDH4A1 chr1 18871430 18902724 - ADGRL2 chr1 81306160 81992436 + AC004922.1 chr7 99325879 99394653 + ALDOA chr16 30064164 30070457 + AGTRAP chr1 11736084 11754802 + AC008878.3 chr19 7382834 7470241 + AC138811.2 chr16 18788063 18801519 - ACTG1 chr17 81509971 81523847 - AKR7A2 chr1 19303965 19312146 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-221-3p chrX 45746180 45746202 - hsa-miR-4508 chr15 23562107 23562123 - hsa-miR-4521 chr17 8186948 8186969 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005726.3 chr17 28573117 28574243 + AC020928.2 chr19 36773712 36775908 - AC023509.1 chr12 53441741 53467528 + AC079781.5 chr7 97851688 97972985 - AC096992.2 chr3 136837338 136839021 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL031282.2 chr1 1702736 1737688 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA