exRNAdisease

Entry Detail

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General Information

Database ID: exR0378829 RNA Name: GABARAP RNA Type: mRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 7240008 End Site(bp): 7242449 External Links: ENSG00000170296

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007906.2 chr16 53035690 53052873 - AC015813.2 chr17 57989038 58007246 - AC027796.3 chr17 3585149 3636249 - AC040162.1 chr16 67929614 67936017 - AC120057.2 chr17 7240427 7244635 - AC138811.2 chr16 18788063 18801519 - ACAA2 chr18 49782164 49813953 - ACPP chr3 132317369 132368298 + ACSL5 chr10 112374018 112428380 + ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - ACTR2 chr2 65227753 65271253 + ADORA2A chr22 24417879 24442357 + ADRM1 chr20 62302093 62308862 + AHCY chr20 34280268 34311802 - AKAP17A chrX 1591604 1602520 + AKAP8L chr19 15380050 15419141 - AL136295.1 chr14 24189157 24213473 - ALDH18A1 chr10 95605941 95656711 - ALDH7A1 chr5 126531200 126595362 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC132217.1 chr11 2129121 2129964 - AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA