exRNAdisease

Entry Detail

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General Information

Database ID: exR0378913 RNA Name: GANAB RNA Type: mRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 62624826 End Site(bp): 62646726 External Links: ENSG00000089597

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA1 chr9 104781006 104928155 - ABCA2 chr9 137007234 137028922 - AC008575.1 chr5 112827213 112867582 + ACACA chr17 37084992 37406836 - ACSL3 chr2 222860942 222944639 + ACTG1 chr17 81509971 81523847 - ACTR2 chr2 65227753 65271253 + ACY1 chr3 51983340 51989197 + ADGRB2 chr1 31727117 31764893 - ADGRL1 chr19 14147743 14206187 - AHCTF1 chr1 246839098 246931967 - AKAP1 chr17 57085092 57121346 + AKAP13 chr15 85380571 85749358 + AL117339.5 chr10 38094368 38360098 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-541-3p chr14 101064548 101064569 + hsa-miR-3652 chr12 103930425 103930442 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010542.4 chr16 66549280 66551189 + AC022167.2 chr16 8848105 8860456 + AC023509.1 chr12 53441741 53467528 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA