exRNAdisease

Entry Detail

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General Information

Database ID: exR0378939 RNA Name: GATAD2B RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 153789030 End Site(bp): 153923360 External Links: ENSG00000143614

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012309.1 chr19 37093019 37210512 - AC048338.1 chr12 122207779 122266423 - AC116366.3 chr5 132410832 132646079 + ACACB chr12 109116595 109268226 + AGTPBP1 chr9 85546539 85742029 - AKT1S1 chr19 49869033 49878459 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-23a-3p chr19 13836595 13836615 - hsa-miR-29a-3p chr7 130876748 130876769 - hsa-miR-23b-3p chr9 95085265 95085287 + hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-29c-3p chr1 207801865 207801886 - hsa-miR-34c-5p chr11 111513451 111513473 + hsa-miR-449a chr5 55170586 55170607 - hsa-miR-641 chr19 40282603 40282626 - hsa-miR-663a chr20 26208243 26208264 - hsa-miR-449b-5p chr5 55170706 55170727 - hsa-miR-483-5p chr11 2134181 2134202 - hsa-miR-1321 chrX 85835832 85835849 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004834.1 chr7 99252452 99325826 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA