exRNAdisease

Entry Detail

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General Information

Database ID: exR0379077 RNA Name: GJA1 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 121435595 End Site(bp): 121449727 External Links: ENSG00000152661

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - ABCB7 chrX 75051048 75156732 - ABHD16A chr6 31686955 31703356 - ABHD17C chr15 80679684 80755621 + AC015813.2 chr17 57989038 58007246 - AC036214.3 chr8 79918860 80080775 - AC073508.2 chr17 40627356 40665141 - AC245033.1 chr15 82536788 82573194 - ACAA2 chr18 49782164 49813953 - ACIN1 chr14 23058564 23095614 - ACLY chr17 41866917 41930542 - ACOT7 chr1 6264269 6394391 - ACP1 chr2 264140 278283 + ADGRL2 chr1 81306160 81992436 + ADK chr10 74151202 74709963 + AFG3L2 chr18 12328944 12377227 - AGBL5 chr2 27042364 27070622 + AL049844.3 chr6 143857318 143938471 + AL136454.1 chr1 192716132 192716653 + ALDH9A1 chr1 165662216 165698863 - ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC064802.1 chr8 114282067 114295839 + AF106564.1 chr8 24912165 24914717 - AL021707.2 chr22 38667585 38681847 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA