exRNAdisease

Entry Detail

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General Information

Database ID: exR0379434 RNA Name: GRINA RNA Type: mRNA Chromosome: chr8 Starnd: + Coordinate: Start Site(bp): 143990056 End Site(bp): 143993415 External Links: ENSG00000178719

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004832.3 chr22 30409255 30428990 + AC006064.6 chr12 6556886 6607367 - AC093525.1 chr16 2513965 2527955 + AC098484.3 chr1 42767292 42794493 + AC245033.1 chr15 82536788 82573194 - ACADVL chr17 7217125 7225266 + ADAM23 chr2 206443532 206621127 + AKAP12 chr6 151239967 151358559 + AL121753.1 chr20 35267885 35280043 - AL136454.1 chr1 192716132 192716653 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-423-5p chr17 30117095 30117117 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC011476.2 chr19 55027593 55053928 - AC012146.1 chr17 5111468 5115004 + AC067930.1 chr8 143579636 143580670 + AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA