exRNAdisease

Entry Detail

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General Information

Database ID: exR0379629 RNA Name: HDAC2 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 113933028 End Site(bp): 114011308 External Links: ENSG00000196591

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA12 chr2 214931542 215138626 - ABHD13 chr13 108218392 108234243 + AC004832.3 chr22 30409255 30428990 + AC048338.1 chr12 122207779 122266423 - ACAA2 chr18 49782164 49813953 - ACIN1 chr14 23058564 23095614 - ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - ACTR1B chr2 97655939 97664044 - ADAR chr1 154582057 154628013 - ADGRG6 chr6 142301854 142446266 + AFF1 chr4 86935002 87141054 + AFTPH chr2 64524305 64593005 + AGO2 chr8 140520156 140635633 - AIFM1 chrX 130129362 130165887 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007686.3 chr14 77028086 77031572 + AC008124.1 chr12 45718046 45727775 - AC008514.1 chr5 170747047 170788650 - AC012321.1 chr16 69703065 69704652 + AC068205.2 chr11 43578889 43840030 + AC069281.2 chr7 100572232 100578700 - AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA