exRNAdisease

Entry Detail

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General Information

Database ID: exR0379720 RNA Name: HIF1AN RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 100529072 End Site(bp): 100559998 External Links: ENSG00000166135

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006978.2 chr7 30362400 30412502 + AC118553.2 chr1 99970011 100083321 + ADAM15 chr1 155050566 155062775 + ADAR chr1 154582057 154628013 - AL021546.1 chr12 120438198 120460006 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-199a-5p chr1 172144592 172144614 - hsa-miR-138-5p chr16 56858527 56858549 + hsa-miR-516b-5p chr19 53736860 53736881 + hsa-miR-493-3p chr14 100869116 100869137 + hsa-miR-642a-5p chr19 45674943 45674964 + hsa-miR-650 chr22 22822791 22822811 + hsa-miR-663a chr20 26208243 26208264 - hsa-miR-362-3p chrX 50009005 50009026 + hsa-miR-1224-5p chr3 184241405 184241423 + hsa-miR-1270 chr19 20399320 20399342 - hsa-miR-1321 chrX 85835832 85835849 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA