exRNAdisease

Entry Detail

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General Information

Database ID: exR0379746 RNA Name: HLA-A RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 29941260 End Site(bp): 29945884 External Links: ENSG00000206503

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACHE chr7 100889994 100896974 - ACTR3 chr2 113890063 113962596 + ABCD1 chrX 153724856 153744755 + AGGF1 chr5 77029251 77065234 + ABHD2 chr15 89087459 89202355 + AC005258.1 chr19 2269525 2341172 + AKR1A1 chr1 45550543 45570049 + ACO2 chr22 41469117 41528989 + ACTB chr7 5527148 5563784 - ACTC1 chr15 34790230 34795549 - ADCY1 chr7 45574140 45723116 + AFG3L2 chr18 12328944 12377227 - AL162417.1 chr9 133098121 133163914 - ALDOA chr16 30064164 30070457 + AFTPH chr2 64524305 64593005 + AL807752.6 chr9 137031241 137040436 - AC092073.1 chr19 34396315 34409364 + AC004922.1 chr7 99325879 99394653 + AGPAT1 chr6 32168212 32178096 - AL022238.4 chr22 40346529 40410054 + AHCY chr20 34280268 34311802 - AC007192.1 chr19 18153158 18178117 + AHCYL1 chr1 109984765 110023742 + AL136295.5 chr14 24147548 24166452 + ACIN1 chr14 23058564 23095614 - AL136454.1 chr1 192716132 192716653 + AC120057.2 chr17 7240427 7244635 - AGO1 chr1 35869808 35930532 + AC027644.4 chr7 66628958 66811189 + AC068547.1 chr2 151802651 151973949 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4680-5p chr10 110898094 110898116 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC008443.1 chr5 181246507 181272167 + AC009686.2 chr8 80032724 80033300 - AC010327.5 chr19 55216660 55221616 + AC016876.2 chr17 7581964 7584086 - AC023509.1 chr12 53441741 53467528 + AC026362.1 chr12 122975320 122982907 + AC084824.5 chr12 32736930 32737660 - AC245884.11 chr19 54308915 54337168 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA